EMDMP Info Page

TM-align Result Membrane
Protein Soluble
Protein Chain
(MP) Aligned region
(MP) Chain
(MP) Aligned region
(SP) Aligned Length RMSD TM-score Sequence
Identity Topology Pfam_A Pfam_B

Structure Alignment 2O6E 1CA9 A 28-185 A 311-501 105 3.34 0.50012 0.057 O zf-TRAF -

Structure Alignment 2O6F 1CA9 A 29-185 A 311-501 104 3.2 0.50268 0.057 O zf-TRAF -

Structure Alignment 2O6F 1D01 A 29-185 A 334-501 104 3.2 0.50235 0.057 O zf-TRAF -

Structure Alignment 2O6C 1CA9 A 28-185 A 311-501 103 3.33 0.50029 0.048 O zf-TRAF -

Structure Alignment 2O6C 1D01 A 28-185 A 334-501 103 3.26 0.50016 0.048 O zf-TRAF -

Structure Alignment 2O6D 1CA9 A 28-185 A 311-501 105 3.3 0.50118 0.057 O zf-TRAF -

Structure Alignment 2O6D 1D01 A 28-185 A 334-501 105 3.28 0.50054 0.057 O zf-TRAF -

Structure Alignment 1NAV 3EYB A 146-408 A 266-484 190 2.79 0.82147 0.238 O zf-C4 Pfam-B_102136,Pfam-B_102136

Structure Alignment 1NAV 3F5C A 146-408 A 318-560 214 2.76 0.76186 0.198 O zf-C4 Pfam-B_102136,Pfam-B_102136

Structure Alignment 1NAV 1PK5 A 146-408 A 318-559 215 2.74 0.77536 0.198 O zf-C4 Pfam-B_102136,Pfam-B_102136

Structure Alignment 1NAV 1ZH7 A 146-408 A 318-560 216 2.78 0.77684 0.194 O zf-C4 Pfam-B_102136,Pfam-B_102136

Structure Alignment 1ID1 2JJQ A 3-155 A 1-405 120 3.22 0.59702 0.083 O tRNA_U5-meth_tr -

Structure Alignment 1ID1 2VS1 A 3-155 A -2-405 120 3.27 0.59763 0.098 O tRNA_U5-meth_tr -

Structure Alignment 2HMS 2CSX A 7-144 A 1-497 116 3.91 0.54294 0.061 O tRNA-synt_1g -

Structure Alignment 2HMS 2CT8 A 7-144 A 1-497 111 3.96 0.54544 0.054 O tRNA-synt_1g -

Structure Alignment 3CYQ 1RQG B 119-251 A 1-606 107 3.76 0.54502 0.034 O tRNA-synt_1g -

Structure Alignment 1ID1 2CSX A 3-155 A 1-497 117 3.93 0.53469 0.053 O tRNA-synt_1g -

Structure Alignment 1ID1 2CT8 A 3-155 A 1-497 118 3.93 0.53899 0.053 O tRNA-synt_1g -

Structure Alignment 3CYP 1RQG B 119-251 A 1-606 107 3.83 0.5525 0.034 O tRNA-synt_1g -

Structure Alignment 3CYQ 2CSX B 119-251 A 1-497 107 3.85 0.54205 0.073 O tRNA-synt_1g -

Structure Alignment 3CYQ 2CT8 B 119-251 A 1-497 106 3.85 0.53312 0.073 O tRNA-synt_1g -

Structure Alignment 2HMS 2CYB A 7-144 A 2-320 106 3.98 0.51506 0.126 O tRNA-synt_1b -

Structure Alignment 2HMS 2YY5 A 7-144 A 2-346 110 4.07 0.5197 0.086 O tRNA-synt_1b -

Structure Alignment 1ID1 2PID A 3-155 A 37-373 103 3.13 0.5066 0.093 O tRNA-synt_1b -

Structure Alignment 3CYP 2IP1 B 119-251 A 99-477 107 4.44 0.52515 0.093 O tRNA-synt_1b -

Structure Alignment 3CYQ 2IP1 B 119-251 A 99-477 110 4.57 0.51385 0.092 O tRNA-synt_1b -

Structure Alignment 2BE6 2GGZ A 3-146 A 21-185 100 3.61 0.52866 0.212 O efhand -

Structure Alignment 2NZ0 2GGZ A 37-216 A 21-185 142 3.23 0.65427 0.245 O efhand -

Structure Alignment 2NZ0 2HET A 37-216 A 9-190 158 3.39 0.7225 0.272 O efhand -

Structure Alignment 3BXL 2GGZ A 3-147 A 21-185 100 3.74 0.50061 0.182 O efhand -

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TM-align Result	Membrane Protein	Soluble Protein	Chain (MP)	Aligned region (MP)	Chain (MP)	Aligned region (SP)	Aligned Length	RMSD	TM-score	Sequence Identity	Topology	Pfam_A	Pfam_B
Structure Alignment	2O6E	1CA9	A	28-185	A	311-501	105	3.34	0.50012	0.057	O	zf-TRAF	-
Structure Alignment	2O6F	1CA9	A	29-185	A	311-501	104	3.2	0.50268	0.057	O	zf-TRAF	-
Structure Alignment	2O6F	1D01	A	29-185	A	334-501	104	3.2	0.50235	0.057	O	zf-TRAF	-
Structure Alignment	2O6C	1CA9	A	28-185	A	311-501	103	3.33	0.50029	0.048	O	zf-TRAF	-
Structure Alignment	2O6C	1D01	A	28-185	A	334-501	103	3.26	0.50016	0.048	O	zf-TRAF	-
Structure Alignment	2O6D	1CA9	A	28-185	A	311-501	105	3.3	0.50118	0.057	O	zf-TRAF	-
Structure Alignment	2O6D	1D01	A	28-185	A	334-501	105	3.28	0.50054	0.057	O	zf-TRAF	-
Structure Alignment	1NAV	3EYB	A	146-408	A	266-484	190	2.79	0.82147	0.238	O	zf-C4	Pfam-B_102136,Pfam-B_102136
Structure Alignment	1NAV	3F5C	A	146-408	A	318-560	214	2.76	0.76186	0.198	O	zf-C4	Pfam-B_102136,Pfam-B_102136
Structure Alignment	1NAV	1PK5	A	146-408	A	318-559	215	2.74	0.77536	0.198	O	zf-C4	Pfam-B_102136,Pfam-B_102136
Structure Alignment	1NAV	1ZH7	A	146-408	A	318-560	216	2.78	0.77684	0.194	O	zf-C4	Pfam-B_102136,Pfam-B_102136
Structure Alignment	1ID1	2JJQ	A	3-155	A	1-405	120	3.22	0.59702	0.083	O	tRNA_U5-meth_tr	-
Structure Alignment	1ID1	2VS1	A	3-155	A	-2-405	120	3.27	0.59763	0.098	O	tRNA_U5-meth_tr	-
Structure Alignment	2HMS	2CSX	A	7-144	A	1-497	116	3.91	0.54294	0.061	O	tRNA-synt_1g	-
Structure Alignment	2HMS	2CT8	A	7-144	A	1-497	111	3.96	0.54544	0.054	O	tRNA-synt_1g	-
Structure Alignment	3CYQ	1RQG	B	119-251	A	1-606	107	3.76	0.54502	0.034	O	tRNA-synt_1g	-
Structure Alignment	1ID1	2CSX	A	3-155	A	1-497	117	3.93	0.53469	0.053	O	tRNA-synt_1g	-
Structure Alignment	1ID1	2CT8	A	3-155	A	1-497	118	3.93	0.53899	0.053	O	tRNA-synt_1g	-
Structure Alignment	3CYP	1RQG	B	119-251	A	1-606	107	3.83	0.5525	0.034	O	tRNA-synt_1g	-
Structure Alignment	3CYQ	2CSX	B	119-251	A	1-497	107	3.85	0.54205	0.073	O	tRNA-synt_1g	-
Structure Alignment	3CYQ	2CT8	B	119-251	A	1-497	106	3.85	0.53312	0.073	O	tRNA-synt_1g	-
Structure Alignment	2HMS	2CYB	A	7-144	A	2-320	106	3.98	0.51506	0.126	O	tRNA-synt_1b	-
Structure Alignment	2HMS	2YY5	A	7-144	A	2-346	110	4.07	0.5197	0.086	O	tRNA-synt_1b	-
Structure Alignment	1ID1	2PID	A	3-155	A	37-373	103	3.13	0.5066	0.093	O	tRNA-synt_1b	-
Structure Alignment	3CYP	2IP1	B	119-251	A	99-477	107	4.44	0.52515	0.093	O	tRNA-synt_1b	-
Structure Alignment	3CYQ	2IP1	B	119-251	A	99-477	110	4.57	0.51385	0.092	O	tRNA-synt_1b	-
Structure Alignment	2BE6	2GGZ	A	3-146	A	21-185	100	3.61	0.52866	0.212	O	efhand	-
Structure Alignment	2NZ0	2GGZ	A	37-216	A	21-185	142	3.23	0.65427	0.245	O	efhand	-
Structure Alignment	2NZ0	2HET	A	37-216	A	9-190	158	3.39	0.7225	0.272	O	efhand	-
Structure Alignment	3BXL	2GGZ	A	3-147	A	21-185	100	3.74	0.50061	0.182	O	efhand	-