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| Speaker |
Title |
Date |
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Donghyo Kim
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Low-N protein engineering with data-efficient deep learning
| Journal |
Nature Methods 2021 |
|
| Author |
Surojit Biswas, Grigory Khimulya, Ethan C. Alley, Kevin M. Esvelt & George M. Church |
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2021-11-16 |
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Inhae Kim
|
Deep-Learning Resources for Studying Glycan- Mediated Host-Microbe Interactions
| Journal |
Cell Host Microbe. 2021 Jan 13;29(1):132-144.e3. |
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| Author |
Daniel Bojar, Rani K Powers, Diogo M Camacho, James J Collins |
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2021-11-09 |
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Youngchul Oh
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An interspecies translation model implicates integrin signaling in infliximab-resistant inflammatory bowel disease
| Journal |
Science Signaling. (2020) |
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| Author |
Douglas K. Brubaker, Manu P. Kumar, Evan L. Chiswick, ... , Douglas A. Lauffenburger. |
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2021-11-02 |
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Juhun Lee
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Atlas of clinically distinct cell states and ecosystems across human solid tumors
| Journal |
Cell. (2021) |
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| Author |
Bogdan A. Luca, Chloe B. Steen, Magdalena Matusiak, ..., Matt van de Rijn, Andrew J. Gentles, Aaron M. Newman. |
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2021-10-26 |
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Minhyuk Park
|
Network propagation-based prioritization of long tail genes in 17 cancer types
| Journal |
Genome Biology. (2021) |
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| Author |
Mohsen, H., Gunasekharan, V., Qing, T., Seay, M., Surovtseva, Y., Negahban, S., ... & Gerstein, M. B. |
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2021-10-19 |
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Seongsu Lim
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Multiplex gene quantification as digital markers for extremely rapid evaluation of chemo-drug sensitivity
| Journal |
Patterns. (2021) https://doi.org/10.1016/j.patter.2021.100360 |
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| Author |
Jiaqi Fan, Yilin Feng, Yifan Cheng, Zitian Wang, Haoran Zhao, Edgar A.Galan, Quanxing Liao, Shuzhong Cui, Weijie Zhang & Shaohua Ma |
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2021-10-12 |
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Hyunsoo Ahn
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Prediction of drug efficacy from transcriptional profiles with deep learning
| Journal |
Nat Biotechnol. (2021) https://doi.org/10.1038/s41587-021-00946-z |
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| Author |
Jie Zhu, Jingxiang Wang, Xin Wang, Mingjing Gao, Bingbing Guo, Miaomiao Gao, Jiarui Liu, Yanqiu Yu, Liang Wang, Weikaixin Kong, Yongpan An, Zurui Liu, Xinpei Sun, Zhuo Huang, Hong Zhou, Ning Zhang, Ruimao Zheng & Zhengwei Xie |
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2021-10-05 |
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Doyeon Ha
|
Pan-cancer analysis of longitudinal metastatic tumors reveals genomic alterations and immune landscape dynamics associated with pembrolizumab sensitivity
| Journal |
Nat Comms |
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| Author |
S.Y. Cindy Yang, Scott C.Lien, ..., Lillian L. Siu, Terevor J.Pugh |
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2021-09-28 |
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Jungho Kong
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Deep learning suggests that gene expression is encoded in all parts of a co-evolving interacting gene regulatory structure
| Journal |
Nat Comm. 2020 Dec 1;11(1):6141. doi: 10.1038/s41467-020-19921-4. |
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| Author |
Jan Zrimec, Christoph S. Brlin, Filip Buric, Azam Sheikh Muhammad, Rhongzen Chen, Verena Siewers, Vilhelm Verendel, Jens Nielsen, Mats Tpel & Aleksej Zelezniak |
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2021-08-24 |
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Donghyo Kim
|
Highly accurate protein structure prediction with AlphaFold
| Journal |
Nature 2021 |
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| Author |
John Jumper, Richard Evans, [] Demis Hassabis |
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2021-08-17 |
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Inhae Kim
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Subclonal reconstruction of tumors by using machine learning and population genetics
| Journal |
Nat Genet. 2020 Sep;52(9):898-907 |
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| Author |
Giulio Caravagna, Timon Heide, Marc J Williams, Luis Zapata, Daniel Nichol, Ketevan Chkhaidze, William Cross, George D Cresswell, Benjamin Werner, Ahmet Acar, Louis Chesler, Chris P Barnes, Guido Sanguinetti, Trevor A Graham, Andrea Sottoriva, |
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2021-08-10 |
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Youngchul Oh
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Barcoded viral tracing of single-cell interactions in central nervous system inflammation.
| Journal |
Science 2021 |
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| Author |
Iain C. Clark, Cristina Gutierrez-Vazquez, Michael A. Wheeler...Francisco J. Quintana |
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2021-08-03 |
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Juhun Lee
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Interpretable systems biomarkers predict response to immune-checkpoint inhibitors.
| Journal |
Patterns 2021 |
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| Author |
scarLapuente-Santana, Maisavan Genderen, Peter A.J.Hilbers, Francesca Finotello, Federica Eduati, |
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2021-07-27 |
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Hyunsoo Ahn
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Learning the language of viral evolution and escape
| Journal |
Science 2021 |
|
| Author |
Brian Hie, Ellen D. Zhong, Bonnie Berger, Bryan Bryson, |
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2021-07-20 |
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Seongsu Lim
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Network medicine framework for identifying drug-repurposing opportunities for COVID-19.
| Journal |
Proceedings of the National Academy of Sciences (PNAS) 2021 |
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| Author |
Deisy Morselli Gysi, talo do Valle, Marinka Zitnik, Asher Ameli, Xiao Gan, Onur Varol, Susan Dina Ghiassian, J. J. Patten, Robert A. Davey, Joseph Loscalzo and Albert-Lszl Barabsi, |
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2021-07-13 |
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