Regulatory Network Conservation: Calculating expression conservation of regulatory networks between human and mouse

 
Ha D, Kim D, Kim I, Oh Y, Kong J, Han SK, Kim S.Nucleic Acids Res. 2022 Feb 28;50(4):1849-1863. doi: 10.1093/nar/gkac050.

[PubMed]

Organoid Biomarker Detection: Network-based machine learning of anti-cancer drug efficacy

 
Kong J, Lee H, Kim D, Han SK, Ha D, Shin K, Kim S.
Nat Communications. 2020 Oct 30;11(1):5485

[PubMed]

CE score: Mutational impact predicted by evolutionary couplings

 

Kim D, Han SK, Lee K, Kim I, Kong J, Kim S (2019)
Nucleic Acids Res. 2019 Jun 14

[PubMed]

PS score: Genotype-phenotype comparison of human and mouse

 

Han SK, Kim D, Lee H, Kim I, Kim S. (2018)
Mol. Biol. Evol. 2018 April 24.

[PubMed]

OASIS2: Online Application for Survival Analysis 2

 

Han SK, Lee D, Lee H, Kim D, Son HG, Yang JS, Lee SV, Kim S
Oncotarget. 2016 Aug 12. doi: 10.18632/oncotarget.11269.

[PubMed]

UTR Designer: Predictive design of mRNA translation initiation regions

 

Seo SW+, Yang JS+, Cho HS, Yang J, Kim SC, Park JM, Kim S*, Jung GY*. (2014)
+Joint first authors *Corresponding authors
Sci Rep. 2014 Mar 31;4:4515. doi: 10.1038/srep04515.

[PubMed]

EMDMP: Functional prediction of the extra-membrane domains of membrane proteins.

 

Nam HJ, Han SK, Bowie JU, Kim S. (2013)
PLoS Comput Biol. 9(3):e1002997. Epub 2013 Mar 21.

[PubMed]

PDZNet: PDZ domain specificity prediction.

 

Kim J, Kim I, Yang JS, Shin YE, Hwang J, Park S, Choi YS, Kim S. (2012)
PLoS Genet. 2012 Feb;8(2):e1002510. Epub 2012 Feb 9.

[PubMed]

OASIS: Online application for the survival analysis of lifespan assays performed in aging research.

 

Yang JS, Nam HJ, Seo M, Han SK, Choi Y, Nam HG, Lee SJ, Kim S. (2011)
PLoS ONE. 6(8):e23525. Epub 2011 Aug 15.

[PubMed]

ConPlex: Web application for evolutionary analysis of protein complex structures.

 

Choi YS, Han SK, Kim J, Yang JS, Jeon J, Ryu SH, Kim S. (2010)
Nucleic Acid Res. Epub 2010 Apr 30.

[PubMed]

IS: Identifying the functional residues responsible for specific substrate recognition and translocation of MFS transporters.

 

Jeon J, Yang JS, Kim S. (2009)
PLoS Comput Biol. 5(10):e1000522. Epub 2009 Oct 2.

[PubMed]

ConLoc: Consensus localization predictions of the human proteome.

 

Park S, Yang JS, Jang SK, Kim S. (2009)
J Proteome Res. 8(7):3367-76.

[PubMed]

MultiP: A program for predicting chloroplast proteins.

 

Lee DW, Kim JK, Lee S, Choi S, Kim S*, Hwang I*. (2008)
*Corresponding authors
Plant Cell. 20(6):1603-1622.

[PubMed]